Trovomics ChIP-seq Tutorials
New to ChIP-seq analysis on Trovomics? This series walks you through the full workflow — from setting up your experiment to visualizing and exporting results from each downstream analysis. Each tutorial is a short, step-by-step walkthrough you can follow at your own pace.
Getting Started
How To Create And Run A ChIP-Seq Experiment
Set up a new ChIP-seq experiment on Trovomics, from uploading sample metadata and FASTQ files to launching your Default Analysis (QC, trimming, alignment, peak calling and annotation).
Visualizing ChIP-seq Default Analysis Results in Trovomics
Explore your Default Analysis results — review QC and ChIPQC reports, dig into peak annotations, and set up the Genome Browser to inspect peaks of interest.
Differential Binding Analysis
Creating a Differential Binding Analysis in Trovomics
Use your Default Analysis results as input to set up and run a differential binding comparison across your samples.
Visualizing Differential Binding Analysis Results in Trovomics
Explore your DBA results end-to-end — PCA and correlation plots, volcano and MA plots, binding affinity heatmaps, and pathway enrichment analysis, all customizable and exportable from the Visualizer.
Functional Enrichment Analysis
Creating a Functional Enrichment Analysis in Trovomics
Run a functional enrichment analysis using your existing ChIP-seq data to identify enriched biological processes, molecular functions, and cellular components.
Visualizing Gene Ontology Enrichment Results in Trovomics
Customize and explore your GO enrichment plots, review the underlying data table, and export your clusterProfiler results.
Motif Analysis
Creating a Motif Analysis in Trovomics
Use your Differential Binding Analysis results to run a motif analysis and uncover enriched sequence motifs in your data.
Visualizing Motif Results in Trovomics
Explore and download your DREME and AME motif reports directly from the Visualizer.
